Publications

Found 185 results

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2015
Carvalho, R., van den Heuvel J., Kleijn J., Verbeek F. (2015) Coupling of Petri Net Models of the Mycobacterial Infection Process and Innate Immune Response Computation 3 (2) p. 150 - 176.
Benard, E.L., Racz P.I., Rougeot J., Nezhinsky A.E., Verbeek F.J., Spaink H.P., Meijer A.H. (2015) Macrophage-expressed perforins mpeg1 and mpeg1.2 have an anti-bacterial function in zebrafish. J Innate Immun 7 (2) p. 136-52. Abstract
Shakeri, M.S., Hulsken B., van Vliet L.J., Stallinga S. (2015) Optical quality assessment of whole slide imaging systems for digital pathology Optics Express 23 (2) p. 1319.
van Verschuer, V.M.T., Hooning M.J., van Baare-Georgieva R.D., Hollestelle A., Timmermans A.M., Koppert L.B., Verhoog L.C., Martens J.W.M., Seynaeve C., van Deurzen C.H.M. (2015) Tumor-associated inflammation as a potential prognostic tool in BRCA1/2-associated breast cancer Human Pathology 46 (2) p. 182 - 190.
van der Sluis, T.C., van Duikeren S., Huppelschoten S., Jordanova E.S., Beyranvand Nejad E., Sloots A., Boon L., Smit V.T.H.B.M., Welters M.J.P., Ossendorp F., van de Water B., Arens R., van der Burg S.H., Melief C.J.M. (2015) Vaccine-Induced Tumor Necrosis Factor-Producing T Cells Synergize with Cisplatin to Promote Tumor Cell Death Clinical Cancer Research 21 (4) p. 781 - 794.
Carreira, R.J., Shyti R., Balluff B., et al. (2015) Large-Scale Mass Spectrometry Imaging Investigation of Consequences of Cortical Spreading Depression in a Transgenic Mouse Model of Migraine Journal of The American Society for Mass Spectrometry In press.
Škrášková, K., Khmelinskii A., Abdelmoula W.M., et al. (2015) Precise anatomical localization of accumulated lipids in Mfp2 deficient murine brains through automated registration of SIMS images to the Allen Brain Atlas. Journal of The American Society for Mass Spectrometry In press.
2014
Slob, J., Verbeek F.J. (2014) Imaging Ontology, contributing to ‘reasonable’ semantics for biomedical repositories. the 6th International Symposium on Semantic Mining in Biomedicine (SMBM 2014), Aveiro, University of Aveiro.
Carvalho, R.V., Kleijn J., Verbeek F. (2014) A multi-scale extensive Petri Net model of the bacterial-macrophage interaction. Proceedings of the 5th International Workshop on Biological Processes & Petri Nets. CEUR Workshop Proceedings, Tunis, Tunesia.
Tleis, M., Verbeek F. (2014) Extracting contours of oval-shaped objects by Hough transform and minimal path algorithms SPIE Proceedings. Sixth International Conference on Digital Image Processing (ICDIP 2014) 9159, Athens, Greece, SPIE p. 915903.
Gómez - Maureira, M., Teunisse C., Schraffenberger H., Verbeek F. (2014) Illuminating Shadows: Introducing Shadow Interaction in Spatial Augmented Reality Ceating the difference: Proceedings of the Chi Sparks 2014 Conference, The Hague, the Netherlands, The Hague University of Applied Sciences , The Netherlands and Chi Nederland , the Dutch association promoting Human - Computer Interaction in The Netherlands (www.chi - nederland.nl).
Camargo Coelho, J., F. V. (2014) Pointing Task Evaluation of Gestural Interface Interaction in 3D Virtual Environment. Ceating the difference: Proceedings of the Chi Sparks 2014 Conference, The Hague, the Netherlands, The Hague University of Applied Sciences , The Netherlands and Chi Nederland , the Dutch association promoting Human - Computer Interaction in The Netherlands (www.chi - nederland.nl).
Abelein, A., Abrahams J.P., Danielsson J., Gräslund A., Jarvet J., Luo J., Tiiman A., Wärmländer S.K.T.S. (2014) The hairpin conformation of the amyloid β peptide is an important structural motif along the aggregation pathway JBIC Journal of Biological Inorganic Chemistry 19 (4-5): Springer p. 623 - 634.
ter Braak, B., Siezen C.L.E., Kannegieter N., Koedoot E., van de Water B., van der Laan J.W. (2014) Classifying the adverse mitogenic mode of action of insulin analogues using a novel mechanism-based genetically engineered human breast cancer cell panel Archives of Toxicology 88 (4) p. 953 - 966.
Abdelmoula, W.M., Škrášková K., Balluff B., Carreira R.J., Tolner E.A., Lelieveldt B.P.F., van der Maaten L., Morreau H., van den Maagdenberg A.M.J.M., Heeren R.M.A., McDonnell L.A., Dijkstra J. (2014) Automatic generic registration of mass spectrometry imaging data to histology using nonlinear stochastic embedding. Anal Chem 86 (18) p. 9204-11. Abstract
Fredriksson, L., Wink S., Herpers B., Benedetti G., Hadi M., de Bont H., Groothuis G., Luijten M., Danen E., de Graauw M., Meerman J., van de Water B. (2014) Drug-induced endoplasmic reticulum and oxidative stress responses independently sensitize toward TNFα-mediated hepatotoxicity. Toxicol Sci 140 (1) p. 144-59. Abstract
Meijer, A.H., van der Vaart M., Spaink H.P. (2014) Real-time imaging and genetic dissection of host-microbe interactions in zebrafish. Cell Microbiol 16 (1) p. 39-49. Abstract
van Hoorn, H., Harkes R., Spiesz E.M., Storm C., van Noort D., Ladoux B., Schmidt T. (2014) The nanoscale architecture of force-bearing focal adhesions. Nano Lett 14 (8) p. 4257-62. Abstract
Bomer, N., den Hollander W., Ramos Y.F.M., Bos S.D., van der Breggen R., Lakenberg N., Pepers B.A., van Eeden A.E., Darvishan A., Tobi E.W., Duijnisveld B.J., van den Akker E.B., Heijmans B.T., van Roon-Mom W.M., et al. (2014) Underlying molecular mechanisms of DIO2 susceptibility in symptomatic osteoarthritis. Ann Rheum Dis. Abstract
Luo, J., Wärmländer S.K.T.S., Yu C.-H., Muhammad K., Gräslund A., Abrahams J.P. (2014) The Aβ peptide forms non-amyloid fibrils in the presence of carbon nanotubes Nanoscale 6 (12): Springer p. 6720-6726.
Daskalopoulos, E.P., Hermans K.C.M., Blankesteijn M.W. (2014) Cardiac (myo)fibroblast: Novel strategies for its targeting following myocardial infarction. Curr Pharm Des 20 (12) p. 1987-2002. Abstract
van Vliet, E., Daneshian M., Beilmann M., Davies A., Fava E., Fleck R., Julé Y., Kansy M., Kustermann S., Macko P., Mundy W.R., Roth A., Shah I., Uteng M., et al. (2014) Current approaches and future role of high content imaging in safety sciences and drug discovery. ALTEX 31 (4) p. 479-93. Abstract
Veneman, W.J., Marín-Juez R., de Sonneville J., Ordas A., Jong-Raadsen S., Meijer A.H., Spaink H.P. (2014) Establishment and optimization of a high throughput setup to study Staphylococcus epidermidis and Mycobacterium marinum infection as a model for drug discovery. J Vis Exp (88) p. e51649. Abstract
Elks, P.M., van der Vaart M., van Hensbergen V., Schutz E., Redd M.J., Murayama E., Spaink H.P., Meijer A.H. (2014) Mycobacteria counteract a TLR-mediated nitrosative defense mechanism in a zebrafish infection model. PLoS One 9 (6) p. e100928. Abstract